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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15276 and 15277 are separated by 231 nucleotides
15277 and 15278 are separated by 337 nucleotides
15278 and 15279 are separated by 660 nucleotides
15279 and 15280 are separated by 237 nucleotides
mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405,479 to 408,297
15276
mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408,529 to 411,391
15277
mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411,729 to 414,888
15278
mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415,549 to 417,203
15279
mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417,441 to 418,066
15280
Group
Condition
mRNA
_6908
mRNA
_6909
mRNA
_6910
mRNA
_6911
mRNA
_6912
15276
15277
15278
15279
15280
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.5
N.D.
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.8
N.D.
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.4
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.5
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
N.D.
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
N.D.
-0.0
N.D.
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
N.D.
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
N.D.
-0.2
N.D.
growth on ypd
YPD
-0.3
+0.2
N.D.
-0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
N.D.
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.0
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
N.D.
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.3
N.D.
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
N.D.
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
N.D.
+0.3
N.D.
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