Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15277 and 15278 are separated by 337 nucleotides15278 and 15279 are separated by 660 nucleotides15279 and 15280 are separated by 237 nucleotides15280 and 15281 are separated by 1494 nucleotides mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408,529 to 411,391 15277 mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411,729 to 414,888 15278 mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415,549 to 417,203 15279 mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417,441 to 418,066 15280 mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635 15281
Group Condition mRNA_6909 mRNA_6910 mRNA_6911 mRNA_6912 mRNA_6913
15277 15278 15279 15280 15281
growth on ricinoleic acid YNB Glucose -0.8 N.D. +0.0 N.D. -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.5 N.D. -0.3 N.D. +0.3
auxotrophy YNB Glucose 75mM Methionine -0.5 N.D. +0.1 N.D. -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 N.D. -0.1 N.D. -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 N.D. -0.0 N.D. +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 N.D. +0.1 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 N.D. +0.1 N.D. +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 N.D. -0.2 N.D. -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.3 N.D. +0.1 N.D. +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 N.D. +0.1 N.D. +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 N.D. -0.2 N.D. -0.1
growth on oleic acid YNB Oleic Acid +0.1 N.D. -0.2 N.D. +0.2
ypd buoyancy 40 hrs High Buoyancy -0.1 N.D. +0.0 N.D. +0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. -0.0 N.D. +0.2
auxotrophy Dropout Complete -0.2 N.D. +0.1 N.D. +0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.0 N.D. +0.3 N.D. -0.1
growth on oleic acid YNB Glucose +0.0 N.D. -0.2 N.D. +0.3
auxotrophy YNB Glucose -0.3 N.D. +0.2 N.D. +0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.1 N.D. -0.2 N.D. +0.4
growth on ypd YPD +0.2 N.D. -0.1 N.D. +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.2 N.D. -0.0 N.D. +0.2
remove
mRNA_6909
plot
remove
mRNA_6910
plot
remove
mRNA_6911
remove
mRNA_6912
plot
remove
mRNA_6913
plot