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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15278 and 15279 are separated by 660 nucleotides
15279 and 15280 are separated by 237 nucleotides
15280 and 15281 are separated by 1494 nucleotides
15281 and 15282 are separated by 715 nucleotides
mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411,729 to 414,888
15278
mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415,549 to 417,203
15279
mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417,441 to 418,066
15280
mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635
15281
mRNA_6914: 15282 - KOG0254 Predicted transporter (major facilitator superfamily), at 421,351 to 423,576
15282
Group
Condition
mRNA
_6910
mRNA
_6911
mRNA
_6912
mRNA
_6913
mRNA
_6914
15278
15279
15280
15281
15282
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
N.D.
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
+0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
N.D.
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.0
+0.2
growth on ypd
YPD
N.D.
-0.1
N.D.
+0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
N.D.
-0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
N.D.
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
-0.1
+0.5
auxotrophy
Dropout Complete
N.D.
+0.1
N.D.
+0.2
+0.4
auxotrophy
YNB Glucose
N.D.
+0.2
N.D.
+0.3
+0.7
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