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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15279 and 15280 are separated by 237 nucleotides
15280 and 15281 are separated by 1494 nucleotides
15281 and 15282 are separated by 715 nucleotides
15282 and 15283 are separated by 559 nucleotides
mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415,549 to 417,203
15279
mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417,441 to 418,066
15280
mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635
15281
mRNA_6914: 15282 - KOG0254 Predicted transporter (major facilitator superfamily), at 421,351 to 423,576
15282
mRNA_6915: 15283 - K01130 E3.1.6.1, aslA arylsulfatase, at 424,136 to 426,200
15283
Group
Condition
mRNA
_6911
mRNA
_6912
mRNA
_6913
mRNA
_6914
mRNA
_6915
15279
15280
15281
15282
15283
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
-0.1
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.1
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.0
+0.4
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.2
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.0
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.3
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.2
+0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+0.1
+0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.2
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.1
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.4
+0.0
+0.3
growth on ypd
YPD
-0.1
N.D.
+0.1
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.1
+0.5
-0.1
auxotrophy
Dropout Complete
+0.1
N.D.
+0.2
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-0.1
+0.2
+0.4
auxotrophy
YNB Glucose
+0.2
N.D.
+0.3
+0.7
-0.1
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