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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15280 and 15281 are separated by 1494 nucleotides
15281 and 15282 are separated by 715 nucleotides
15282 and 15283 are separated by 559 nucleotides
15283 and 15284 are separated by 300 nucleotides
mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417,441 to 418,066
15280
mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635
15281
mRNA_6914: 15282 - KOG0254 Predicted transporter (major facilitator superfamily), at 421,351 to 423,576
15282
mRNA_6915: 15283 - K01130 E3.1.6.1, aslA arylsulfatase, at 424,136 to 426,200
15283
mRNA_6916: 15284 - SUPERFAMILY--SSF52833, at 426,501 to 427,574
15284
Group
Condition
mRNA
_6912
mRNA
_6913
mRNA
_6914
mRNA
_6915
mRNA
_6916
15280
15281
15282
15283
15284
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.1
-1.0
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.0
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.2
-0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.4
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.4
-0.8
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.1
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.5
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.4
-0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.3
-0.6
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
+0.3
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.2
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.1
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.2
+0.4
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.3
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.0
+0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.1
+0.1
-0.0
growth on ypd
YPD
N.D.
+0.1
+0.3
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.2
+0.4
+0.2
auxotrophy
YNB Glucose
N.D.
+0.3
+0.7
-0.1
-0.2
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