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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15281 and 15282 are separated by 715 nucleotides
15282 and 15283 are separated by 559 nucleotides
15283 and 15284 are separated by 300 nucleotides
15284 and 15285 are separated by 236 nucleotides
mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635
15281
mRNA_6914: 15282 - KOG0254 Predicted transporter (major facilitator superfamily), at 421,351 to 423,576
15282
mRNA_6915: 15283 - K01130 E3.1.6.1, aslA arylsulfatase, at 424,136 to 426,200
15283
mRNA_6916: 15284 - SUPERFAMILY--SSF52833, at 426,501 to 427,574
15284
mRNA_6917: 15285 - K04883 KCNAB2 potassium voltage-gated channel Shaker-related subfamily A, beta member 2, at 427,811 to 428,744
15285
Group
Condition
mRNA
_6913
mRNA
_6914
mRNA
_6915
mRNA
_6916
mRNA
_6917
15281
15282
15283
15284
15285
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
-1.0
-0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.0
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.0
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
+0.3
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.0
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
-0.8
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
-0.5
-0.3
+0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.5
-0.1
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
-0.6
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
-0.4
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.3
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
+0.4
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.2
-0.4
+0.1
+0.6
growth on ypd
YPD
+0.1
+0.3
+0.1
-0.0
+0.4
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.4
+0.0
+1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.1
+0.1
+0.7
auxotrophy
Dropout Complete
+0.2
+0.4
-0.2
-0.1
+1.0
auxotrophy
YNB Glucose
+0.3
+0.7
-0.1
-0.2
+1.2
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