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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15283 and 15284 are separated by 300 nucleotides
15284 and 15285 are separated by 236 nucleotides
15285 and 15286 are separated by 1258 nucleotides
15286 and 15287 are separated by 252 nucleotides
mRNA_6915: 15283 - K01130 E3.1.6.1, aslA arylsulfatase, at 424,136 to 426,200
15283
mRNA_6916: 15284 - SUPERFAMILY--SSF52833, at 426,501 to 427,574
15284
mRNA_6917: 15285 - K04883 KCNAB2 potassium voltage-gated channel Shaker-related subfamily A, beta member 2, at 427,811 to 428,744
15285
mRNA_6918: 15286 - HMMPfam-Coiled-coil domain-containing protein 56-PF09813, at 430,003 to 430,506
15286
mRNA_6919: 15287 - K07556 ATPeAF2, ATPAF2, ATP12 ATP synthase mitochondrial F1 complex assembly factor 2, at 430,759 to 431,959
15287
Group
Condition
mRNA
_6915
mRNA
_6916
mRNA
_6917
mRNA
_6918
mRNA
_6919
15283
15284
15285
15286
15287
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.5
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.8
+0.1
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.4
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.3
+0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.1
+0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.3
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.0
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
-0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+1.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.7
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
-0.1
+1.0
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
-0.2
+1.2
N.D.
N.D.
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