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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15288 and 15289 are separated by 1193 nucleotides
15289 and 15290 are separated by 120 nucleotides
15290 and 15291 are separated by 872 nucleotides
15291 and 15292 are separated by 553 nucleotides
mRNA_6920: 15288 - BLAST GTP binding protein 2 [Moniliophthora roreri MCA ..., at 432,544 to 434,015
15288
mRNA_6921: 15289 - Hypothetical Protein, at 435,209 to 436,044
15289
mRNA_6922: 15290 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 436,165 to 438,557
15290
mRNA_6923: 15291 - Hypothetical Protein, at 439,430 to 443,984
15291
mRNA_6924: 15292 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 444,538 to 446,309
15292
Group
Condition
mRNA
_6920
mRNA
_6921
mRNA
_6922
mRNA
_6923
mRNA
_6924
15288
15289
15290
15291
15292
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.2
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.5
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.4
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
-0.3
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
-0.4
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.0
-0.2
-0.4
+0.2
auxotrophy
Dropout Complete
-0.2
-0.0
-0.4
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.5
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.1
-0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.0
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.1
-0.4
+0.6
auxotrophy
YNB Glucose
-0.1
-0.0
+0.2
+0.0
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.0
+0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.1
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.3
+0.3
+0.0
growth on ypd
YPD
+0.5
+0.1
+0.4
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
+0.4
+0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.3
+0.3
+0.3
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