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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15300 and 15301 are separated by 1000 nucleotides
15301 and 15302 are separated by 180 nucleotides
15302 and 15303 are separated by 111 nucleotides
15303 and 15304 are separated by 98 nucleotides
mRNA_6932: 15300 - K00764 purF, PPAT amidophosphoribosyltransferase, at 463,904 to 466,074
15300
mRNA_6933: 15301 - KOG0810 SNARE protein Syntaxin 1 and related proteins, at 467,075 to 468,286
15301
mRNA_6934: 15302 - K12871 CCDC12 coiled-coil domain-containing protein 12, at 468,467 to 469,312
15302
mRNA_6935: 15303 - K12830 SF3B3, SAP130, RSE1 splicing factor 3B subunit 3, at 469,424 to 473,834
15303
mRNA_6936: 15304 - K09669 FUT10 alpha-1,3-fucosyltransferase 10, at 473,933 to 475,521
15304
Group
Condition
mRNA
_6932
mRNA
_6933
mRNA
_6934
mRNA
_6935
mRNA
_6936
15300
15301
15302
15303
15304
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
-0.7
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-1.6
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.8
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.7
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.1
N.D.
-0.4
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
+0.9
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.6
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.6
-1.0
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.4
N.D.
-0.5
auxotrophy
Dropout Complete
N.D.
+0.0
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.3
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
-0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.2
N.D.
+0.4
growth on ypd
YPD
N.D.
-0.6
+0.7
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.5
N.D.
+0.3
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