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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15303 and 15304 are separated by 98 nucleotides
15304 and 15305 are separated by 585 nucleotides
15305 and 15306 are separated by 113 nucleotides
15306 and 15307 are separated by 175 nucleotides
mRNA_6935: 15303 - K12830 SF3B3, SAP130, RSE1 splicing factor 3B subunit 3, at 469,424 to 473,834
15303
mRNA_6936: 15304 - K09669 FUT10 alpha-1,3-fucosyltransferase 10, at 473,933 to 475,521
15304
mRNA_6937: 15305 - K03781 katE, CAT, catB, srpA catalase, at 476,107 to 478,851
15305
mRNA_6938: 15306 - SUPERFAMILY--SSF56801, at 478,965 to 480,801
15306
mRNA_6939: 15307 - K17973 NAA25, MDM20 N-terminal acetyltransferase B complex non-catalytic subunit, at 480,977 to 484,798
15307
Group
Condition
mRNA
_6935
mRNA
_6936
mRNA
_6937
mRNA
_6938
mRNA
_6939
15303
15304
15305
15306
15307
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.1
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
+0.1
-0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
+0.1
-0.3
N.D.
growth on ypd
YPD
N.D.
+0.5
-0.1
-1.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
-0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.2
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.2
+0.4
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.0
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.3
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.2
-0.5
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.3
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
+0.3
-0.2
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.2
+0.3
N.D.
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