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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15304 and 15305 are separated by 585 nucleotides
15305 and 15306 are separated by 113 nucleotides
15306 and 15307 are separated by 175 nucleotides
15307 and 15308 are separated by 68 nucleotides
mRNA_6936: 15304 - K09669 FUT10 alpha-1,3-fucosyltransferase 10, at 473,933 to 475,521
15304
mRNA_6937: 15305 - K03781 katE, CAT, catB, srpA catalase, at 476,107 to 478,851
15305
mRNA_6938: 15306 - SUPERFAMILY--SSF56801, at 478,965 to 480,801
15306
mRNA_6939: 15307 - K17973 NAA25, MDM20 N-terminal acetyltransferase B complex non-catalytic subunit, at 480,977 to 484,798
15307
mRNA_6940: 15308 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 484,867 to 487,020
15308
Group
Condition
mRNA
_6936
mRNA
_6937
mRNA
_6938
mRNA
_6939
mRNA
_6940
15304
15305
15306
15307
15308
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-1.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.1
-0.7
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.1
-0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
-0.5
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.3
N.D.
-0.2
growth on ypd
YPD
+0.5
-0.1
-1.1
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
+0.4
N.D.
+0.0
auxotrophy
Dropout Complete
+0.2
-0.0
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-0.5
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.5
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose
+0.3
-0.2
+0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
+0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.2
-0.0
+0.1
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-0.3
N.D.
+0.2
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