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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15308 and 15309 are separated by 346 nucleotides
15309 and 15310 are separated by 127 nucleotides
15310 and 15311 are separated by 187 nucleotides
15311 and 15312 are separated by 475 nucleotides
mRNA_6940: 15308 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 484,867 to 487,020
15308
mRNA_6941: 15309 - K02154 ATPeV0A, ATP6N V-type H+-transporting ATPase subunit a, at 487,367 to 491,016
15309
mRNA_6942: 15310 - K15029 EIF3L translation initiation factor 3 subunit L, at 491,144 to 493,608
15310
mRNA_6943: 15311 - SUPERFAMILY--SSF52047, at 493,796 to 495,109
15311
mRNA_6944: 15312 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 495,585 to 496,942
15312
Group
Condition
mRNA
_6940
mRNA
_6941
mRNA
_6942
mRNA
_6943
mRNA
_6944
15308
15309
15310
15311
15312
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.0
-1.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
-0.7
-0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-1.0
+0.2
-0.8
auxotrophy
YNB Glucose
-0.3
N.D.
-0.4
-0.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.7
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.8
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.6
+0.1
-0.6
auxotrophy
Dropout Complete
-0.1
N.D.
-0.5
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-0.4
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-1.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.4
-0.1
-0.7
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.9
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.3
-0.1
-0.1
growth on ypd
YPD
+0.4
N.D.
+0.0
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.3
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.1
-0.1
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.1
+0.0
+0.9
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+1.3
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+1.0
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.4
-0.1
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.5
+0.2
+0.9
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