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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15311 and 15312 are separated by 475 nucleotides
15312 and 15313 are separated by 291 nucleotides
15313 and 15314 are separated by 190 nucleotides
15314 and 15315 are separated by 636 nucleotides
mRNA_6943: 15311 - SUPERFAMILY--SSF52047, at 493,796 to 495,109
15311
mRNA_6944: 15312 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 495,585 to 496,942
15312
mRNA_6945: 15313 - SUPERFAMILY--SSF52047, at 497,234 to 499,004
15313
mRNA_6946: 15314 - K04713 SUR2 sphinganine C4-monooxygenase, at 499,195 to 500,447
15314
mRNA_6947: 15315 - K02555 MIH1 M-phase inducer tyrosine phosphatase, at 501,084 to 504,114
15315
Group
Condition
mRNA
_6943
mRNA
_6944
mRNA
_6945
mRNA
_6946
mRNA
_6947
15311
15312
15313
15314
15315
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.0
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.9
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.8
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
-0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.5
-0.2
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.7
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.0
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.6
+0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.0
+0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.9
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.7
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.9
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+1.1
+0.0
N.D.
N.D.
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