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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15315 and 15316 are separated by 1199 nucleotides
15316 and 15317 are separated by 385 nucleotides
15317 and 15318 are separated by 1022 nucleotides
15318 and 15319 are separated by 586 nucleotides
mRNA_6947: 15315 - K02555 MIH1 M-phase inducer tyrosine phosphatase, at 501,084 to 504,114
15315
mRNA_6948: 15316 - BLAST putative ephrin type-a receptor 8-like protein [Botry..., at 505,314 to 506,461
15316
mRNA_6949: 15317 - HMMPfam-Cenp-O kinetochore centromere component-PF09496, at 506,847 to 507,636
15317
mRNA_6950: 15318 - KOG4505 Na+/H+ antiporter, at 508,659 to 510,404
15318
mRNA_6951: 15319 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 510,991 to 511,843
15319
Group
Condition
mRNA
_6947
mRNA
_6948
mRNA
_6949
mRNA
_6950
mRNA
_6951
15315
15316
15317
15318
15319
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.4
-3.8
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.4
-3.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.3
-2.9
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.3
-1.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.0
-1.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.4
+0.0
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.2
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
+0.6
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.5
+0.2
+0.7
growth on ypd
YPD
N.D.
-0.0
+0.6
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.0
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.7
+0.3
-0.7
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.5
+0.4
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.7
+0.6
-0.5
auxotrophy
YNB Glucose
N.D.
-0.1
+0.4
+0.2
+0.4
auxotrophy
Dropout Complete
N.D.
-0.1
+0.2
+0.3
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.1
+0.3
+0.5
growth on oleic acid
YNB Glucose
N.D.
+0.5
+0.1
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.3
+0.3
+0.8
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.2
+0.6
+0.7
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