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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15317 and 15318 are separated by 1022 nucleotides
15318 and 15319 are separated by 586 nucleotides
15319 and 15320 are separated by 280 nucleotides
15320 and 15321 are separated by 128 nucleotides
mRNA_6949: 15317 - HMMPfam-Cenp-O kinetochore centromere component-PF09496, at 506,847 to 507,636
15317
mRNA_6950: 15318 - KOG4505 Na+/H+ antiporter, at 508,659 to 510,404
15318
mRNA_6951: 15319 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 510,991 to 511,843
15319
mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512,124 to 517,290
15320
mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517,419 to 518,782
15321
Group
Condition
mRNA
_6949
mRNA
_6950
mRNA
_6951
mRNA
_6952
mRNA
_6953
15317
15318
15319
15320
15321
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-3.8
-0.3
-0.6
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-3.5
-0.1
-1.2
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-2.9
-0.4
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.0
+0.1
-0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-1.0
+0.6
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.2
-0.6
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.6
-0.5
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.7
+0.6
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
+0.7
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.5
+0.4
-0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
+0.5
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
+1.0
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.3
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
+0.7
-0.1
-0.0
growth on ypd
YPD
+0.6
+0.2
+0.0
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.8
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.7
-0.0
+0.1
auxotrophy
Dropout Complete
+0.2
+0.3
+0.8
+0.1
-0.3
auxotrophy
YNB Glucose
+0.4
+0.2
+0.4
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.6
+0.7
-0.1
+0.0
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