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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15319 and 15320 are separated by 280 nucleotides
15320 and 15321 are separated by 128 nucleotides
15321 and 15322 are separated by 410 nucleotides
15322 and 15323 are separated by 652 nucleotides
mRNA_6951: 15319 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 510,991 to 511,843
15319
mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512,124 to 517,290
15320
mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517,419 to 518,782
15321
mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519,193 to 522,362
15322
mRNA_6955: 15323 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 523,015 to 527,499
15323
Group
Condition
mRNA
_6951
mRNA
_6952
mRNA
_6953
mRNA
_6954
mRNA
_6955
15319
15320
15321
15322
15323
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.9
-0.2
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.6
-0.4
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.4
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
+0.2
N.D.
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.2
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
+0.1
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.6
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
-0.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.4
-0.2
N.D.
+0.1
growth on ypd
YPD
+0.0
+0.3
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
+0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.2
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.2
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.1
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.7
-0.0
+0.1
N.D.
-0.2
auxotrophy
Dropout Complete
+0.8
+0.1
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.1
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.0
-0.1
+0.0
N.D.
-0.3
auxotrophy
YNB Glucose
+0.4
+0.0
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.7
-0.1
+0.0
N.D.
+0.2
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