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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15320 and 15321 are separated by 128 nucleotides
15321 and 15322 are separated by 410 nucleotides
15322 and 15323 are separated by 652 nucleotides
15323 and 15324 are separated by 507 nucleotides
mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512,124 to 517,290
15320
mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517,419 to 518,782
15321
mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519,193 to 522,362
15322
mRNA_6955: 15323 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 523,015 to 527,499
15323
mRNA_6956: 15324 - K00720 UGCG ceramide glucosyltransferase, at 528,007 to 529,680
15324
Group
Condition
mRNA
_6952
mRNA
_6953
mRNA
_6954
mRNA
_6955
mRNA
_6956
15320
15321
15322
15323
15324
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.4
N.D.
-0.6
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
N.D.
-1.0
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.2
N.D.
-0.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
+0.4
N.D.
-0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.6
N.D.
-0.7
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
N.D.
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
N.D.
+0.0
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
N.D.
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.1
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.2
N.D.
+0.1
+0.3
growth on ypd
YPD
+0.3
-0.1
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
N.D.
-0.3
+1.0
auxotrophy
Dropout Complete
+0.1
-0.3
N.D.
-0.1
+0.4
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose
+0.0
+0.3
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
N.D.
+0.2
+0.6
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