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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15332 and 15333 are separated by 560 nucleotides
15333 and 15334 are separated by 359 nucleotides
15334 and 15335 are separated by 251 nucleotides
15335 and 15336 are separated by 315 nucleotides
mRNA_6964: 15332 - K18754 LIN28 protein lin-28, at 551,090 to 553,316
15332
mRNA_6965: 15333 - Hypothetical Protein, at 553,877 to 555,010
15333
mRNA_6966: 15334 - K02210 MCM7, CDC47 DNA replication licensing factor MCM7, at 555,370 to 558,100
15334
mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558,352 to 560,106
15335
mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560,422 to 561,850
15336
Group
Condition
mRNA
_6964
mRNA
_6965
mRNA
_6966
mRNA
_6967
mRNA
_6968
15332
15333
15334
15335
15336
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.6
N.D.
+0.0
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.3
N.D.
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
N.D.
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.5
N.D.
-0.2
-0.4
growth on oleic acid
YNB Glucose
+0.1
-0.2
N.D.
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
N.D.
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.3
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
N.D.
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
N.D.
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
N.D.
-0.0
+0.1
auxotrophy
Dropout Complete
+0.1
+0.6
N.D.
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose
+0.1
+0.5
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
N.D.
+0.7
-0.1
growth on ypd
YPD
+0.1
+0.6
N.D.
-0.5
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
N.D.
+0.7
+0.1
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