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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15335 and 15336 are separated by 315 nucleotides
15336 and 15337 are separated by 144 nucleotides
15337 and 15338 are separated by 2063 nucleotides
15338 and 15339 are separated by 374 nucleotides
mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558,352 to 560,106
15335
mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560,422 to 561,850
15336
mRNA_6969: 15337 - K17261 CAP1_2, SRV2 adenylyl cyclase-associated protein, at 561,995 to 564,059
15337
mRNA_6970: 15338 - Hypothetical Protein, at 566,123 to 566,867
15338
mRNA_6971: 15339 - K03671 trxA thioredoxin 1, at 567,242 to 568,041
15339
Group
Condition
mRNA
_6967
mRNA
_6968
mRNA
_6969
mRNA
_6970
mRNA
_6971
15335
15336
15337
15338
15339
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.2
N.D.
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.5
-0.2
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.5
N.D.
+0.6
-0.9
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
N.D.
+0.5
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
N.D.
-0.5
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.1
N.D.
+0.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.3
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
-0.1
-0.5
N.D.
+0.5
+0.0
auxotrophy
YNB Glucose
-0.1
-0.2
N.D.
+0.3
+0.0
growth on ypd
YPD
-0.5
+0.7
N.D.
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.3
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.1
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.3
N.D.
+0.7
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.1
N.D.
+0.1
+0.6
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