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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15337 and 15338 are separated by 2063 nucleotides
15338 and 15339 are separated by 374 nucleotides
15339 and 15340 are separated by 134 nucleotides
15340 and 15341 are separated by 172 nucleotides
mRNA_6969: 15337 - K17261 CAP1_2, SRV2 adenylyl cyclase-associated protein, at 561,995 to 564,059
15337
mRNA_6970: 15338 - Hypothetical Protein, at 566,123 to 566,867
15338
mRNA_6971: 15339 - K03671 trxA thioredoxin 1, at 567,242 to 568,041
15339
mRNA_6972: 15340 - K20279 SYNJ synaptojanin, at 568,176 to 572,419
15340
mRNA_6973: 15341 - K11303 HAT1, KAT1 histone acetyltransferase 1, at 572,592 to 574,305
15341
Group
Condition
mRNA
_6969
mRNA
_6970
mRNA
_6971
mRNA
_6972
mRNA
_6973
15337
15338
15339
15340
15341
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.3
-0.2
-0.7
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.4
-0.2
-0.5
growth on ypd
YPD
N.D.
+0.2
-0.4
-0.2
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.9
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.1
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.2
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
+0.6
-0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.1
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
-0.4
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.5
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.7
-0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.7
+0.2
+0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.1
-0.1
+0.6
auxotrophy
YNB Glucose
N.D.
+0.3
+0.0
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.6
-0.0
+0.1
auxotrophy
Dropout Complete
N.D.
+0.5
+0.0
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.2
-0.2
+0.9
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