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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15339 and 15340 are separated by 134 nucleotides
15340 and 15341 are separated by 172 nucleotides
15341 and 15342 are separated by 136 nucleotides
15342 and 15343 are separated by 656 nucleotides
mRNA_6971: 15339 - K03671 trxA thioredoxin 1, at 567,242 to 568,041
15339
mRNA_6972: 15340 - K20279 SYNJ synaptojanin, at 568,176 to 572,419
15340
mRNA_6973: 15341 - K11303 HAT1, KAT1 histone acetyltransferase 1, at 572,592 to 574,305
15341
mRNA_6974: 15342 - K17686 copA, ATP7 Cu+-exporting ATPase, at 574,442 to 577,802
15342
mRNA_6975: 15343 - Hypothetical Protein, at 578,459 to 580,488
15343
Group
Condition
mRNA
_6971
mRNA
_6972
mRNA
_6973
mRNA
_6974
mRNA
_6975
15339
15340
15341
15342
15343
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
-0.4
N.D.
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.2
-0.5
N.D.
-1.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.4
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
+0.1
N.D.
-1.2
growth on ypd
YPD
-0.4
-0.2
-0.5
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.7
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.4
-0.2
-0.5
N.D.
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.6
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.4
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.4
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
-0.1
N.D.
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.9
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.3
N.D.
+0.8
auxotrophy
Dropout Complete
+0.0
+0.2
+0.3
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
-0.4
N.D.
+1.6
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.0
+0.1
N.D.
+0.7
auxotrophy
YNB Glucose
+0.0
+0.1
+0.3
N.D.
+1.3
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