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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15343 and 15344 are separated by 2129 nucleotides
15344 and 15345 are separated by 26 nucleotides
15345 and 15346 are separated by 142 nucleotides
15346 and 15347 are separated by 576 nucleotides
mRNA_6975: 15343 - Hypothetical Protein, at 578,459 to 580,488
15343
mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582,618 to 583,763
15344
mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583,790 to 584,346
15345
mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584,489 to 585,687
15346
mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586,264 to 588,274
15347
Group
Condition
mRNA
_6975
mRNA
_6976
mRNA
_6977
mRNA
_6978
mRNA
_6979
15343
15344
15345
15346
15347
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.8
-0.7
+0.7
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-1.7
+0.2
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-0.6
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.2
+0.5
+0.2
-0.2
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.4
+0.6
+0.4
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
+0.2
-0.2
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.0
-0.0
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.3
-0.2
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
+0.4
-0.4
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.1
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.5
+0.3
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.6
+0.3
-0.2
-0.2
growth on ypd
YPD
+0.1
-0.4
+0.4
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.4
+0.5
+0.4
+0.0
growth on oleic acid
YNB Glucose
+0.9
-0.1
+0.1
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.9
+0.4
-0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.7
-0.1
+0.4
+0.2
+0.0
auxotrophy
Dropout Complete
+0.9
+0.3
+0.1
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.6
+0.0
-0.0
+0.2
auxotrophy
YNB Glucose
+1.3
+0.5
-0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.6
+0.7
+0.7
+0.0
+0.5
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