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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15346 and 15347 are separated by 576 nucleotides
15347 and 15348 are separated by 356 nucleotides
15348 and 15349 are separated by 294 nucleotides
15349 and 15350 are separated by 527 nucleotides
mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584,489 to 585,687
15346
mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586,264 to 588,274
15347
mRNA_6980: 15348 - SUPERFAMILY--SSF51445, at 588,631 to 590,610
15348
mRNA_6981: 15349 - KOG0613 Projectin/twitchin and related proteins, at 590,905 to 593,177
15349
mRNA_6982: 15350 - K11497 CENPC centromere protein C, at 593,705 to 596,436
15350
Group
Condition
mRNA
_6978
mRNA
_6979
mRNA
_6980
mRNA
_6981
mRNA
_6982
15346
15347
15348
15349
15350
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.5
-0.5
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.9
+0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-2.0
+0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.6
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-0.3
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.0
-0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.0
-0.2
N.D.
auxotrophy
Dropout Complete
-0.0
+0.3
+0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.0
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
+0.4
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.5
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose
+0.2
+0.3
+0.3
-0.1
N.D.
growth on ypd
YPD
+0.2
+0.4
+0.3
+0.4
N.D.
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