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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15353 and 15354 are separated by 139 nucleotides
15354 and 15355 are separated by 564 nucleotides
15355 and 15356 are separated by 334 nucleotides
15356 and 15357 are separated by 70 nucleotides
mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602,865 to 604,394
15353
mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604,534 to 605,830
15354
mRNA_6987: 15355 - BLAST plasma membrane protein [Pseudozyma hubeiensis SY62], at 606,395 to 609,554
15355
mRNA_6988: 15356 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 609,889 to 611,754
15356
mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611,825 to 615,054
15357
Group
Condition
mRNA
_6985
mRNA
_6986
mRNA
_6987
mRNA
_6988
mRNA
_6989
15353
15354
15355
15356
15357
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.0
+0.1
-3.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.1
-0.1
-2.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
-0.6
-1.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.3
+0.2
-2.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.5
+0.1
-2.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.0
-0.7
-1.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.2
-0.7
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.2
-0.1
-1.2
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.1
-0.5
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.5
-0.0
-1.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.4
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
-0.5
+0.1
auxotrophy
Dropout Complete
+0.1
N.D.
-0.4
+0.3
-0.2
growth on ypd
YPD
-0.0
N.D.
-0.1
+0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.1
-0.4
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.1
+0.2
+0.1
auxotrophy
YNB Glucose
+0.5
N.D.
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.0
-0.2
+1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.6
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.2
-0.1
+1.9
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