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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15357 and 15358 are separated by 508 nucleotides
15358 and 15359 are separated by 643 nucleotides
15359 and 15360 are separated by 352 nucleotides
15360 and 15361 are separated by 80 nucleotides
mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611,825 to 615,054
15357
mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615,563 to 617,347
15358
mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617,991 to 620,077
15359
mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620,430 to 622,573
15360
mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622,654 to 624,401
15361
Group
Condition
mRNA
_6989
mRNA
_6990
mRNA
_6991
mRNA
_6992
mRNA
_6993
15357
15358
15359
15360
15361
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.8
-1.2
+0.4
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-3.2
+0.2
-0.6
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-2.4
-0.1
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.5
-0.3
-0.6
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.9
-0.5
+0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.2
-0.7
-0.0
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
+0.8
-0.1
-0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
+0.1
-0.0
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.6
+0.2
-0.3
-0.1
-0.5
growth on oleic acid
YNB Glucose
-0.2
-0.2
+0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.8
+0.2
+0.3
+0.0
-0.2
auxotrophy
Dropout Complete
-0.2
+0.7
-0.0
+0.1
-0.8
growth on ypd
YPD
-0.3
+0.1
+0.0
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.4
+0.1
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.5
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.2
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.1
+0.2
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
+0.6
+0.4
-0.6
auxotrophy
YNB Glucose
-0.1
+0.6
+0.7
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.9
+0.8
+0.1
-0.2
-0.5
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