Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15357 and 15358 are separated by 508 nucleotides15358 and 15359 are separated by 643 nucleotides15359 and 15360 are separated by 352 nucleotides15360 and 15361 are separated by 80 nucleotides mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611,825 to 615,054 15357 mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615,563 to 617,347 15358 mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617,991 to 620,077 15359 mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620,430 to 622,573 15360 mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622,654 to 624,401 15361
Group Condition mRNA_6989 mRNA_6990 mRNA_6991 mRNA_6992 mRNA_6993
15357 15358 15359 15360 15361
buoyancy on lipid accumulation 40 hrs Low Buoyancy -2.8 -1.2 +0.4 +0.0 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -3.2 +0.2 -0.6 -0.3 +0.2
facs on lipid accumulation Sorted No BODIPY Gate -2.4 -0.1 -0.3 -0.2 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -2.5 -0.3 -0.6 -0.1 +0.2
ypd buoyancy 40 hrs Low Buoyancy -1.9 -0.5 +0.2 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.2 -0.7 -0.0 -0.2 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -1.2 +0.8 -0.1 -0.3 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid -1.1 +0.1 -0.0 +0.0 -0.5
growth on oleic acid YNB Oleic Acid -0.6 +0.2 -0.3 -0.1 -0.5
growth on oleic acid YNB Glucose -0.2 -0.2 +0.1 -0.3 -0.1
growth on ricinoleic acid YNB Glucose -0.8 +0.2 +0.3 +0.0 -0.2
auxotrophy Dropout Complete -0.2 +0.7 -0.0 +0.1 -0.8
growth on ypd YPD -0.3 +0.1 +0.0 +0.2 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.3 +0.1 +0.2 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.3 +0.4 +0.1 -0.8
ypd buoyancy 40 hrs No Buoyancy Separation +1.0 -0.5 +0.1 +0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.6 -0.2 +0.1 +0.1 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.6 +0.1 +0.2 +0.1 -0.4
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.5 +0.6 +0.4 -0.6
auxotrophy YNB Glucose -0.1 +0.6 +0.7 +0.2 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.9 +0.8 +0.1 -0.2 -0.5
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