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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15358 and 15359 are separated by 643 nucleotides
15359 and 15360 are separated by 352 nucleotides
15360 and 15361 are separated by 80 nucleotides
15361 and 15362 are separated by 126 nucleotides
mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615,563 to 617,347
15358
mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617,991 to 620,077
15359
mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620,430 to 622,573
15360
mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622,654 to 624,401
15361
mRNA_6994: 15362 - K10134 EI24 etoposide-induced 2.4 mRNA, at 624,528 to 626,391
15362
Group
Condition
mRNA
_6990
mRNA
_6991
mRNA
_6992
mRNA
_6993
mRNA
_6994
15358
15359
15360
15361
15362
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.6
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.1
+0.1
-0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.0
-0.2
-0.3
+0.6
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.1
-0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.2
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.1
+0.0
-0.5
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.3
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.6
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
+0.4
+0.0
-0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
+0.0
-0.5
+0.1
growth on ypd
YPD
+0.1
+0.0
+0.2
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
+0.2
-0.1
+0.0
auxotrophy
Dropout Complete
+0.7
-0.0
+0.1
-0.8
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.1
-0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
+0.1
-0.8
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.1
-0.3
-0.6
+0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.0
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.1
-0.2
-0.5
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.6
+0.4
-0.6
+0.2
auxotrophy
YNB Glucose
+0.6
+0.7
+0.2
-0.5
+0.3
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