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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15360 and 15361 are separated by 80 nucleotides
15361 and 15362 are separated by 126 nucleotides
15362 and 15363 are separated by 230 nucleotides
15363 and 15364 are separated by 126 nucleotides
mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620,430 to 622,573
15360
mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622,654 to 624,401
15361
mRNA_6994: 15362 - K10134 EI24 etoposide-induced 2.4 mRNA, at 624,528 to 626,391
15362
mRNA_6995: 15363 - K15323 TSEN34 tRNA-splicing endonuclease subunit Sen34, at 626,622 to 627,882
15363
mRNA_6996: 15364 - Hypothetical Protein, at 628,009 to 630,189
15364
Group
Condition
mRNA
_6992
mRNA
_6993
mRNA
_6994
mRNA
_6995
mRNA
_6996
15360
15361
15362
15363
15364
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.6
N.D.
-0.3
auxotrophy
Dropout Complete
+0.1
-0.8
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.8
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.6
+0.4
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.5
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.5
+0.1
N.D.
+0.2
growth on ypd
YPD
+0.2
-0.3
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.6
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.5
+0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.6
N.D.
+0.2
auxotrophy
YNB Glucose
+0.2
-0.5
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
+0.6
N.D.
+0.0
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