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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15364 and 15365 are separated by 64 nucleotides
15365 and 15366 are separated by 238 nucleotides
15366 and 15367 are separated by 339 nucleotides
15367 and 15368 are separated by 604 nucleotides
mRNA_6996: 15364 - Hypothetical Protein, at 628,009 to 630,189
15364
mRNA_6997: 15365 - K17053 ABP140 tRNAThr (cytosine32-N3)-methyltransferase, at 630,254 to 632,002
15365
mRNA_6998: 15366 - K00288 MTHFD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase, at 632,241 to 635,924
15366
mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636,264 to 637,761
15367
mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638,366 to 642,076
15368
Group
Condition
mRNA
_6996
mRNA
_6997
mRNA
_6998
mRNA
_6999
mRNA
_7000
15364
15365
15366
15367
15368
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.4
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-1.0
-0.7
+0.2
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.2
-1.4
+0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.0
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-1.3
+0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.5
-1.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.3
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
-1.4
+0.4
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.7
+0.1
+0.4
growth on ypd
YPD
+0.1
+0.1
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-1.1
+0.5
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
-0.8
+0.5
+0.1
auxotrophy
YNB Glucose
+0.1
+0.1
-1.3
+0.7
+0.8
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
-0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
-0.5
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
-0.1
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
-0.3
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
+0.1
-0.1
+0.4
auxotrophy
Dropout Complete
+0.0
+0.3
-0.6
+0.3
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-0.6
+0.6
+0.6
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