Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15366 and 15367 are separated by 339 nucleotides15367 and 15368 are separated by 604 nucleotides15368 and 15369 are separated by 124 nucleotides15369 and 15370 are separated by 198 nucleotides mRNA_6998: 15366 - K00288 MTHFD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase, at 632,241 to 635,924 15366 mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636,264 to 637,761 15367 mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638,366 to 642,076 15368 mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642,201 to 644,311 15369 mRNA_7002: 15370 - Hypothetical Protein, at 644,510 to 646,069 15370
Group Condition mRNA_6998 mRNA_6999 mRNA_7000 mRNA_7001 mRNA_7002
15366 15367 15368 15369 15370
growth on ricinoleic acid YNB Ricinoleic Acid -1.3 +0.2 +0.3 -0.3 -0.4
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.6 -0.4 +0.2 -0.1
growth on ricinoleic acid YNB Glucose -1.3 +0.4 +0.3 -0.3 -0.1
growth on oleic acid YNB Glucose -1.4 +0.0 +0.5 -0.0 -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.1 -0.6 -0.0 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.7 +0.2 -0.2 -0.4 +0.3
auxotrophy YNB Glucose 75mM Methionine -1.4 +0.4 +0.5 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.1 +0.2 -0.6 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.8 +0.5 +0.1 -0.1 -0.3
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.1 -0.2 +0.2 -0.2
auxotrophy Dropout Complete -0.6 +0.3 +0.7 -0.4 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.1 +0.5 -0.2 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.7 +0.1 +0.4 +0.1 +0.1
auxotrophy YNB Glucose 75mM Arginine -1.1 +0.5 +0.6 -0.1 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.5 +0.1 +0.2 +0.0 +0.2
growth on ypd YPD -0.1 -0.1 +0.2 +0.0 +0.0
growth on oleic acid YNB Oleic Acid -0.1 -0.2 +0.6 -0.0 -0.0
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.1 +0.4 +0.0 -0.1
auxotrophy YNB Glucose -1.3 +0.7 +0.8 +0.2 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.0 +0.5 -0.1 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.6 +0.6 +0.6 -0.1 +0.2
remove
mRNA_6998
plot
remove
mRNA_6999
plot
remove
mRNA_7000
remove
mRNA_7001
plot
remove
mRNA_7002
plot