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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15366 and 15367 are separated by 339 nucleotides
15367 and 15368 are separated by 604 nucleotides
15368 and 15369 are separated by 124 nucleotides
15369 and 15370 are separated by 198 nucleotides
mRNA_6998: 15366 - K00288 MTHFD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase, at 632,241 to 635,924
15366
mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636,264 to 637,761
15367
mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638,366 to 642,076
15368
mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642,201 to 644,311
15369
mRNA_7002: 15370 - Hypothetical Protein, at 644,510 to 646,069
15370
Group
Condition
mRNA
_6998
mRNA
_6999
mRNA
_7000
mRNA
_7001
mRNA
_7002
15366
15367
15368
15369
15370
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
+0.2
+0.3
-0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.6
-0.4
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-1.3
+0.4
+0.3
-0.3
-0.1
growth on oleic acid
YNB Glucose
-1.4
+0.0
+0.5
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.6
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.2
-0.2
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.4
+0.4
+0.5
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.2
-0.6
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.5
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.2
+0.2
-0.2
auxotrophy
Dropout Complete
-0.6
+0.3
+0.7
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
+0.5
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.1
+0.4
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.1
+0.5
+0.6
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.1
+0.2
+0.0
+0.2
growth on ypd
YPD
-0.1
-0.1
+0.2
+0.0
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.6
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose
-1.3
+0.7
+0.8
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
+0.5
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.6
+0.6
-0.1
+0.2
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