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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15369 and 15370 are separated by 198 nucleotides
15370 and 15371 are separated by 1428 nucleotides
15371 and 15372 are separated by 132 nucleotides
15372 and 15373 are separated by 211 nucleotides
mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642,201 to 644,311
15369
mRNA_7002: 15370 - Hypothetical Protein, at 644,510 to 646,069
15370
mRNA_7003: 15371 - KOG2394 WD40 protein DMR-N9, at 647,498 to 649,944
15371
mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650,077 to 652,863
15372
mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653,075 to 653,981
15373
Group
Condition
mRNA
_7001
mRNA
_7002
mRNA
_7003
mRNA
_7004
mRNA
_7005
15369
15370
15371
15372
15373
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.7
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
-0.4
-0.7
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
+0.1
-2.1
+0.2
auxotrophy
Dropout Complete
-0.4
-0.1
-0.4
-0.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.5
-1.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.3
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
-0.2
-0.7
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.8
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.6
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
-0.6
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.3
+0.0
-0.3
growth on ypd
YPD
+0.0
+0.0
-0.4
-0.1
-0.2
auxotrophy
YNB Glucose
+0.2
+0.1
-0.2
-0.4
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.0
-0.1
-0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.2
+0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.4
+0.2
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
+0.1
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
+0.6
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
+0.3
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+1.1
+0.4
-0.0
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