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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15371 and 15372 are separated by 132 nucleotides
15372 and 15373 are separated by 211 nucleotides
15373 and 15374 are separated by 268 nucleotides
15374 and 15375 are separated by 741 nucleotides
mRNA_7003: 15371 - KOG2394 WD40 protein DMR-N9, at 647,498 to 649,944
15371
mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650,077 to 652,863
15372
mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653,075 to 653,981
15373
mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654,250 to 659,147
15374
mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659,889 to 660,691
15375
Group
Condition
mRNA
_7003
mRNA
_7004
mRNA
_7005
mRNA
_7006
mRNA
_7007
15371
15372
15373
15374
15375
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.4
-0.4
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-1.3
+0.3
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-2.1
+0.2
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.6
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
+0.3
-0.2
-1.9
growth on ricinoleic acid
YNB Glucose
-0.6
+0.2
+0.1
-0.4
-0.8
growth on oleic acid
YNB Oleic Acid
-0.2
-0.7
-0.0
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.4
-0.3
-0.1
auxotrophy
YNB Glucose
-0.2
-0.4
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.2
-0.1
-0.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.1
-0.3
+0.4
auxotrophy
Dropout Complete
-0.4
-0.2
-0.5
-0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.8
+0.2
-0.2
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.4
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.7
+0.3
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-0.3
-0.0
-0.1
growth on ypd
YPD
-0.4
-0.1
-0.2
-0.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
-0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.6
-0.0
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.1
+0.4
-0.0
+0.2
-0.3
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