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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15374 and 15375 are separated by 741 nucleotides
15375 and 15376 are separated by 369 nucleotides
15376 and 15377 are separated by 168 nucleotides
15377 and 15378 are separated by 470 nucleotides
mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654,250 to 659,147
15374
mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659,889 to 660,691
15375
mRNA_7008: 15376 - Hypothetical Protein, at 661,061 to 661,645
15376
mRNA_7009: 15377 - Hypothetical Protein, at 661,814 to 663,427
15377
mRNA_7010: 15378 - Hypothetical Protein, at 663,898 to 666,099
15378
Group
Condition
mRNA
_7006
mRNA
_7007
mRNA
_7008
mRNA
_7009
mRNA
_7010
15374
15375
15376
15377
15378
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.9
-0.8
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-2.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
-0.8
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.7
-0.5
-0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
+0.5
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
-0.2
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.2
+0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.2
+0.3
-0.0
N.D.
growth on ypd
YPD
-0.3
+0.7
-0.6
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.0
+0.0
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.4
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
+0.3
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
+0.4
+0.0
N.D.
auxotrophy
YNB Glucose
-0.1
-0.3
+0.4
+0.6
N.D.
auxotrophy
Dropout Complete
-0.3
+0.4
+0.4
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
+0.3
+0.5
N.D.
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