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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15381 and 15382 are separated by 2103 nucleotides
15382 and 15383 are separated by 1470 nucleotides
15383 and 15384 are separated by 153 nucleotides
15384 and 15385 are separated by 113 nucleotides
mRNA_7013: 15381 - K10755 RFC2_4 replication factor C subunit 2/4, at 672,641 to 674,296
15381
mRNA_7014: 15382 - KOG1721 FOG Zn-finger, at 676,400 to 676,740
15382
mRNA_7015: 15383 - KOG2913 Predicted membrane protein, at 678,211 to 680,397
15383
mRNA_7016: 15384 - K01142 E3.1.11.2, xthA exodeoxyribonuclease III, at 680,551 to 683,526
15384
mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683,640 to 684,233
15385
Group
Condition
mRNA
_7013
mRNA
_7014
mRNA
_7015
mRNA
_7016
mRNA
_7017
15381
15382
15383
15384
15385
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.2
-1.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.4
-2.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.3
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.1
-0.6
growth on ypd
YPD
N.D.
N.D.
+0.3
+0.2
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
+0.1
-0.6
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.6
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
+0.2
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.4
+0.1
+0.5
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.1
+0.6
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
+0.3
+0.8
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