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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15383 and 15384 are separated by 153 nucleotides
15384 and 15385 are separated by 113 nucleotides
15385 and 15386 are separated by 583 nucleotides
15386 and 15387 are separated by 216 nucleotides
mRNA_7015: 15383 - KOG2913 Predicted membrane protein, at 678,211 to 680,397
15383
mRNA_7016: 15384 - K01142 E3.1.11.2, xthA exodeoxyribonuclease III, at 680,551 to 683,526
15384
mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683,640 to 684,233
15385
mRNA_7018: 15386 - Hypothetical Protein, at 684,817 to 685,871
15386
mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686,088 to 688,034
15387
Group
Condition
mRNA
_7015
mRNA
_7016
mRNA
_7017
mRNA
_7018
mRNA
_7019
15383
15384
15385
15386
15387
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.4
-2.4
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
-1.6
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
-1.0
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.2
-0.5
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
-0.5
-0.3
+0.2
growth on ypd
YPD
+0.3
+0.2
-0.9
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.0
-0.2
+0.2
-0.8
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.6
-0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.6
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
+0.0
+0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.1
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
-0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.1
+0.3
+0.1
auxotrophy
Dropout Complete
+0.3
+0.1
+0.5
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.5
+0.5
+0.9
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.5
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
+0.0
-0.0
+1.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
+0.3
+0.1
+0.9
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.6
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
+0.1
+0.2
+0.9
auxotrophy
YNB Glucose
+0.2
+0.3
+0.8
+0.2
+0.4
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