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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15385 and 15386 are separated by 583 nucleotides
15386 and 15387 are separated by 216 nucleotides
15387 and 15388 are separated by 194 nucleotides
15388 and 15389 are separated by 1198 nucleotides
mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683,640 to 684,233
15385
mRNA_7018: 15386 - Hypothetical Protein, at 684,817 to 685,871
15386
mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686,088 to 688,034
15387
mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688,229 to 691,595
15388
mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459
15389
Group
Condition
mRNA
_7017
mRNA
_7018
mRNA
_7019
mRNA
_7020
mRNA
_7021
15385
15386
15387
15388
15389
ypd buoyancy
40 hrs No Buoyancy Separation
-2.4
-0.6
-0.1
+0.4
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
-0.8
-1.9
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
-0.2
+0.0
-1.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
-0.4
-0.9
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.2
-0.3
-0.2
+0.2
growth on ypd
YPD
-0.9
+0.1
-0.2
-0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.1
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.3
+0.2
-0.8
+0.7
growth on ricinoleic acid
YNB Glucose
-0.6
-0.0
+0.5
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.5
+0.3
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
+0.1
+0.2
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.6
+0.2
+0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.5
+0.9
+0.1
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.0
+1.2
+0.2
-1.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.1
+0.5
-0.2
auxotrophy
Dropout Complete
+0.5
-0.2
+0.3
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.9
-0.8
+0.2
auxotrophy
YNB Glucose
+0.8
+0.2
+0.4
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
+0.9
-0.5
-0.0
growth on oleic acid
YNB Glucose
+0.6
+0.3
+0.4
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
+0.2
+0.2
-0.2
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