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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15387 and 15388 are separated by 194 nucleotides
15388 and 15389 are separated by 1198 nucleotides
15389 and 15390 are separated by 282 nucleotides
15390 and 15391 are separated by 200 nucleotides
mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686,088 to 688,034
15387
mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688,229 to 691,595
15388
mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459
15389
mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694,742 to 696,268
15390
mRNA_7023: 15391 - Interpro RNA polymerase I-specific transcription-initiation factor, at 696,469 to 700,104
15391
Group
Condition
mRNA
_7019
mRNA
_7020
mRNA
_7021
mRNA
_7022
mRNA
_7023
15387
15388
15389
15390
15391
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-1.9
+0.3
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.9
-0.4
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.9
-0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.9
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-1.0
+0.4
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
-1.3
+0.3
N.D.
auxotrophy
YNB Glucose
+0.4
-0.6
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+0.1
-1.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
-0.3
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
+0.2
-1.4
-0.3
N.D.
growth on ypd
YPD
-0.2
-0.3
+0.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.8
+0.7
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.5
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
+0.1
N.D.
auxotrophy
Dropout Complete
+0.3
-0.2
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.9
-0.5
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.8
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
+0.2
-0.0
N.D.
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