Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15388 and 15389 are separated by 1198 nucleotides15389 and 15390 are separated by 282 nucleotides15390 and 15391 are separated by 200 nucleotides15391 and 15392 are separated by 129 nucleotides mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688,229 to 691,595 15388 mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459 15389 mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694,742 to 696,268 15390 mRNA_7023: 15391 - Interpro RNA polymerase I-specific transcription-initiation factor, at 696,469 to 700,104 15391 mRNA_7024: 15392 - K02179 BUB2 cell cycle arrest protein BUB2, at 700,234 to 701,558 15392
Group Condition mRNA_7020 mRNA_7021 mRNA_7022 mRNA_7023 mRNA_7024
15388 15389 15390 15391 15392
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -1.4 -0.3 N.D. +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.9 -0.4 -0.0 N.D. +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -1.9 +0.3 -0.0 N.D. +0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.0 +0.4 -0.2 N.D. -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -1.2 -0.4 N.D. +0.4
growth on oleic acid YNB Oleic Acid +0.2 -0.9 -0.2 N.D. +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.8 +0.7 -0.2 N.D. -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 +0.2 -0.0 N.D. -0.8
facs on lipid accumulation Sorted No BODIPY Gate -0.9 -0.2 +0.1 N.D. +0.3
growth on ricinoleic acid YNB Glucose -0.3 -0.3 -0.2 N.D. +0.3
auxotrophy YNB Glucose -0.6 -0.2 -0.2 N.D. +0.5
auxotrophy YNB Glucose 75mM Methionine -0.5 -0.0 -0.1 N.D. +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.4 -1.3 +0.3 N.D. +0.3
auxotrophy YNB Glucose 75mM Arginine -0.8 +0.2 +0.0 N.D. +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.2 -0.1 N.D. +0.0
growth on oleic acid YNB Glucose -0.5 +0.1 +0.0 N.D. +0.4
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.1 +0.1 N.D. +0.1
auxotrophy Dropout Complete -0.2 +0.1 +0.0 N.D. +0.4
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.2 +0.1 N.D. +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.5 -0.2 +0.2 N.D. +0.0
growth on ypd YPD -0.3 +0.3 +0.0 N.D. +0.7
remove
mRNA_7020
plot
remove
mRNA_7021
plot
remove
mRNA_7022
remove
mRNA_7023
plot
remove
mRNA_7024
plot