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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15388 and 15389 are separated by 1198 nucleotides
15389 and 15390 are separated by 282 nucleotides
15390 and 15391 are separated by 200 nucleotides
15391 and 15392 are separated by 129 nucleotides
mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688,229 to 691,595
15388
mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459
15389
mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694,742 to 696,268
15390
mRNA_7023: 15391 - Interpro RNA polymerase I-specific transcription-initiation factor, at 696,469 to 700,104
15391
mRNA_7024: 15392 - K02179 BUB2 cell cycle arrest protein BUB2, at 700,234 to 701,558
15392
Group
Condition
mRNA
_7020
mRNA
_7021
mRNA
_7022
mRNA
_7023
mRNA
_7024
15388
15389
15390
15391
15392
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-1.4
-0.3
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.4
-0.0
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
+0.3
-0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.4
-0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-1.2
-0.4
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.9
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.7
-0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.0
N.D.
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.2
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
-0.2
N.D.
+0.3
auxotrophy
YNB Glucose
-0.6
-0.2
-0.2
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.0
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-1.3
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.2
+0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
-0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.5
+0.1
+0.0
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
N.D.
+0.1
auxotrophy
Dropout Complete
-0.2
+0.1
+0.0
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
+0.2
N.D.
+0.0
growth on ypd
YPD
-0.3
+0.3
+0.0
N.D.
+0.7
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