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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15396 and 15397 are separated by 256 nucleotides
15397 and 15398 are separated by 559 nucleotides
15398 and 15399 are separated by 1040 nucleotides
15399 and 15400 are separated by 138 nucleotides
mRNA_7028: 15396 - SUPERFAMILY--SSF81383, at 707,580 to 708,539
15396
mRNA_7029: 15397 - Hypothetical Protein, at 708,796 to 709,745
15397
mRNA_7030: 15398 - SUPERFAMILY--SSF50685, at 710,305 to 711,678
15398
mRNA_7031: 15399 - K03131 TAF6 transcription initiation factor TFIID subunit 6, at 712,719 to 714,354
15399
mRNA_7032: 15400 - Hypothetical Protein, at 714,493 to 715,089
15400
Group
Condition
mRNA
_7028
mRNA
_7029
mRNA
_7030
mRNA
_7031
mRNA
_7032
15396
15397
15398
15399
15400
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.1
N.D.
-1.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
+0.2
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-1.0
-0.1
N.D.
+0.7
auxotrophy
YNB Glucose
N.D.
-0.6
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.1
N.D.
+0.3
growth on ypd
YPD
N.D.
-0.2
+0.2
N.D.
+0.3
auxotrophy
Dropout Complete
N.D.
-0.2
+0.2
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.0
N.D.
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.4
N.D.
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.4
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.7
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+1.2
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
+1.2
N.D.
+0.8
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