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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15397 and 15398 are separated by 559 nucleotides
15398 and 15399 are separated by 1040 nucleotides
15399 and 15400 are separated by 138 nucleotides
15400 and 15401 are separated by 503 nucleotides
mRNA_7029: 15397 - Hypothetical Protein, at 708,796 to 709,745
15397
mRNA_7030: 15398 - SUPERFAMILY--SSF50685, at 710,305 to 711,678
15398
mRNA_7031: 15399 - K03131 TAF6 transcription initiation factor TFIID subunit 6, at 712,719 to 714,354
15399
mRNA_7032: 15400 - Hypothetical Protein, at 714,493 to 715,089
15400
mRNA_7033: 15401 - Hypothetical Protein, at 715,593 to 716,570
15401
Group
Condition
mRNA
_7029
mRNA
_7030
mRNA
_7031
mRNA
_7032
mRNA
_7033
15397
15398
15399
15400
15401
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
-1.4
-1.2
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.1
N.D.
+0.7
-0.4
auxotrophy
YNB Glucose
-0.6
-0.0
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.2
N.D.
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
N.D.
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
N.D.
+0.1
-0.2
growth on ypd
YPD
-0.2
+0.2
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
-0.1
+0.6
growth on oleic acid
YNB Glucose
+0.3
+0.4
N.D.
+0.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.4
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.7
N.D.
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+1.2
N.D.
+0.8
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+1.2
N.D.
+0.6
+0.4
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mRNA_7029
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