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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15398 and 15399 are separated by 1040 nucleotides
15399 and 15400 are separated by 138 nucleotides
15400 and 15401 are separated by 503 nucleotides
15401 and 15402 are separated by 914 nucleotides
mRNA_7030: 15398 - SUPERFAMILY--SSF50685, at 710,305 to 711,678
15398
mRNA_7031: 15399 - K03131 TAF6 transcription initiation factor TFIID subunit 6, at 712,719 to 714,354
15399
mRNA_7032: 15400 - Hypothetical Protein, at 714,493 to 715,089
15400
mRNA_7033: 15401 - Hypothetical Protein, at 715,593 to 716,570
15401
mRNA_7034: 15402 - HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934, at 717,485 to 718,005
15402
Group
Condition
mRNA
_7030
mRNA
_7031
mRNA
_7032
mRNA
_7033
mRNA
_7034
15398
15399
15400
15401
15402
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-1.4
-1.2
+0.2
auxotrophy
YNB Glucose
-0.0
N.D.
+0.3
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.3
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.1
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.3
-0.3
-0.1
auxotrophy
Dropout Complete
+0.2
N.D.
+0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.6
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.1
+0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.7
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.3
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.4
-0.5
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.2
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
+0.1
+0.1
+0.5
growth on ypd
YPD
+0.2
N.D.
+0.3
-0.2
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
N.D.
+0.8
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.7
N.D.
+0.3
+0.1
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
N.D.
+0.6
+0.4
-0.1
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