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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15400 and 15401 are separated by 503 nucleotides
15401 and 15402 are separated by 914 nucleotides
15402 and 15403 are separated by 316 nucleotides
15403 and 15404 are separated by 874 nucleotides
mRNA_7032: 15400 - Hypothetical Protein, at 714,493 to 715,089
15400
mRNA_7033: 15401 - Hypothetical Protein, at 715,593 to 716,570
15401
mRNA_7034: 15402 - HMMPfam-UBA/TS-N domain-PF00627,HMMPfam-Uncharacterized conserved protein (DUF2196)-PF09962,ProSiteProfiles-Ubiquitin-associated domain (UBA) profile.-PS50030,SUPERFAMILY--SSF46934, at 717,485 to 718,005
15402
mRNA_7035: 15403 - K11826 AP2M1 AP-2 complex subunit mu-1, at 718,322 to 720,163
15403
mRNA_7036: 15404 - K00831 serC, PSAT1 phosphoserine aminotransferase, at 721,038 to 722,425
15404
Group
Condition
mRNA
_7032
mRNA
_7033
mRNA
_7034
mRNA
_7035
mRNA
_7036
15400
15401
15402
15403
15404
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-1.2
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
-0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.4
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
-0.1
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.6
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.6
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.7
-0.4
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.2
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.5
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.4
-0.1
N.D.
N.D.
growth on ypd
YPD
+0.3
-0.2
+0.9
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.6
N.D.
N.D.
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