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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15403 and 15404 are separated by 874 nucleotides
15404 and 15405 are separated by 120 nucleotides
15405 and 15406 are separated by 548 nucleotides
15406 and 15407 are separated by 350 nucleotides
mRNA_7035: 15403 - K11826 AP2M1 AP-2 complex subunit mu-1, at 718,322 to 720,163
15403
mRNA_7036: 15404 - K00831 serC, PSAT1 phosphoserine aminotransferase, at 721,038 to 722,425
15404
mRNA_7037: 15405 - K08254 E3.2.1.59 glucan endo-1,3-alpha-glucosidase, at 722,546 to 724,803
15405
mRNA_7038: 15406 - K15458 SAP185_190 SIT4-associating protein SAP185/190, at 725,352 to 729,605
15406
mRNA_7039: 15407 - Hypothetical Protein, at 729,956 to 731,972
15407
Group
Condition
mRNA
_7035
mRNA
_7036
mRNA
_7037
mRNA
_7038
mRNA
_7039
15403
15404
15405
15406
15407
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-1.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.6
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
-0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
-0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
+0.5
-0.4
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
-0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.3
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
-0.0
+0.4
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