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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15412 and 15413 are separated by 1366 nucleotides
15413 and 15414 are separated by 151 nucleotides
15414 and 15415 are separated by 388 nucleotides
15415 and 15416 are separated by 378 nucleotides
mRNA_7044: 15412 - KOG4299 PHD Zn-finger protein, at 740,961 to 743,698
15412
mRNA_7045: 15413 - K20288 COG1 conserved oligomeric Golgi complex subunit 1, at 745,065 to 748,525
15413
mRNA_7046: 15414 - K01341 KEX2 kexin, at 748,677 to 751,864
15414
mRNA_7047: 15415 - K07466 RFA1, RPA1, rpa replication factor A1, at 752,253 to 754,600
15415
mRNA_7048: 15416 - KOG2476 Uncharacterized conserved protein, at 754,979 to 757,509
15416
Group
Condition
mRNA
_7044
mRNA
_7045
mRNA
_7046
mRNA
_7047
mRNA
_7048
15412
15413
15414
15415
15416
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
N.D.
-0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.1
N.D.
+0.0
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
N.D.
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.4
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
-1.0
N.D.
+0.2
growth on ypd
YPD
+0.1
N.D.
-0.8
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
N.D.
+0.8
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.5
N.D.
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.8
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.6
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.9
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.9
N.D.
+0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
N.D.
-0.1
N.D.
+0.3
auxotrophy
Dropout Complete
+1.0
N.D.
+0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.9
N.D.
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.9
N.D.
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.4
N.D.
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+1.0
N.D.
+0.5
N.D.
+0.4
auxotrophy
YNB Glucose
+1.2
N.D.
+0.7
N.D.
+0.5
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