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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15416 and 15417 are separated by 1118 nucleotides
15417 and 15418 are separated by 70 nucleotides
15418 and 15419 are separated by 241 nucleotides
15419 and 15420 are separated by 393 nucleotides
mRNA_7048: 15416 - KOG2476 Uncharacterized conserved protein, at 754,979 to 757,509
15416
mRNA_7049: 15417 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 758,628 to 760,981
15417
mRNA_7050: 15418 - K08678 UXS1, uxs UDP-glucuronate decarboxylase, at 761,052 to 762,821
15418
mRNA_7051: 15419 - HMMPfam-Translation initiation factor eIF3 subunit-PF08597, at 763,063 to 764,121
15419
mRNA_7052: 15420 - K01624 FBA, fbaA fructose-bisphosphate aldolase, class II, at 764,515 to 766,298
15420
Group
Condition
mRNA
_7048
mRNA
_7049
mRNA
_7050
mRNA
_7051
mRNA
_7052
15416
15417
15418
15419
15420
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
-0.6
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.7
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.5
-0.6
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.4
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.6
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.3
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
+0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.4
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.3
+0.6
+0.6
N.D.
N.D.
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