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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15417 and 15418 are separated by 70 nucleotides
15418 and 15419 are separated by 241 nucleotides
15419 and 15420 are separated by 393 nucleotides
15420 and 15421 are separated by 286 nucleotides
mRNA_7049: 15417 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 758,628 to 760,981
15417
mRNA_7050: 15418 - K08678 UXS1, uxs UDP-glucuronate decarboxylase, at 761,052 to 762,821
15418
mRNA_7051: 15419 - HMMPfam-Translation initiation factor eIF3 subunit-PF08597, at 763,063 to 764,121
15419
mRNA_7052: 15420 - K01624 FBA, fbaA fructose-bisphosphate aldolase, class II, at 764,515 to 766,298
15420
mRNA_7053: 15421 - K01192 E3.2.1.25, MANBA, manB beta-mannosidase, at 766,585 to 770,373
15421
Group
Condition
mRNA
_7049
mRNA
_7050
mRNA
_7051
mRNA
_7052
mRNA
_7053
15417
15418
15419
15420
15421
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
N.D.
N.D.
-0.3
auxotrophy
Dropout Complete
-0.6
+0.2
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.6
+0.4
N.D.
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.0
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
N.D.
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose
-0.6
+0.2
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.8
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.6
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.3
N.D.
N.D.
-0.2
growth on ypd
YPD
+0.6
+0.6
N.D.
N.D.
+0.5
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