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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15421 and 15422 are separated by 233 nucleotides
15422 and 15423 are separated by 278 nucleotides
15423 and 15424 are separated by 521 nucleotides
15424 and 15425 are separated by 313 nucleotides
mRNA_7053: 15421 - K01192 E3.2.1.25, MANBA, manB beta-mannosidase, at 766,585 to 770,373
15421
mRNA_7054: 15422 - K14018 PLAA, DOA1, UFD3 phospholipase A-2-activating protein, at 770,607 to 773,938
15422
mRNA_7055: 15423 - K03841 FBP, fbp fructose-1,6-bisphosphatase I, at 774,217 to 775,850
15423
mRNA_7056: 15424 - K01557 FAHD1 acylpyruvate hydrolase, at 776,372 to 777,538
15424
mRNA_7057: 15425 - K15634 gpmB probable phosphoglycerate mutase, at 777,852 to 778,935
15425
Group
Condition
mRNA
_7053
mRNA
_7054
mRNA
_7055
mRNA
_7056
mRNA
_7057
15421
15422
15423
15424
15425
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.7
-1.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-1.0
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-1.9
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-1.9
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.3
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.0
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
+0.2
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.1
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.2
+0.1
-0.1
auxotrophy
Dropout Complete
+0.0
N.D.
-0.0
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.0
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.1
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
+0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.4
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.5
+0.2
+0.3
auxotrophy
YNB Glucose
+0.4
N.D.
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.5
+0.7
-0.0
growth on ypd
YPD
+0.5
N.D.
+0.2
+0.3
-0.0
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