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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15425 and 15426 are separated by 521 nucleotides
15426 and 15427 are separated by 218 nucleotides
15427 and 15428 are separated by 152 nucleotides
15428 and 15429 are separated by 851 nucleotides
mRNA_7057: 15425 - K15634 gpmB probable phosphoglycerate mutase, at 777,852 to 778,935
15425
mRNA_7058: 15426 - KOG0206 P-type ATPase, at 779,457 to 784,844
15426
mRNA_7059: 15427 - BLAST golgi apparatus membrane protein [Pochonia chlamy..., at 785,063 to 786,823
15427
mRNA_7060: 15428 - HMMPfam-Proteolipid membrane potential modulator-PF01679, at 786,976 to 788,620
15428
mRNA_7061: 15429 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 789,472 to 792,234
15429
Group
Condition
mRNA
_7057
mRNA
_7058
mRNA
_7059
mRNA
_7060
mRNA
_7061
15425
15426
15427
15428
15429
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-2.6
+0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.9
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.9
+0.1
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.8
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.2
+0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.8
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
-0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.2
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
-0.0
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.0
N.D.
+0.1
growth on ypd
YPD
-0.0
-0.1
+0.3
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
+0.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.1
N.D.
+0.4
auxotrophy
Dropout Complete
-0.1
+0.1
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
+0.0
N.D.
-0.3
auxotrophy
YNB Glucose
+0.2
-0.2
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.5
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
+0.3
N.D.
+0.3
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