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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15430 and 15431 are separated by 11 nucleotides
15431 and 15432 are separated by 1722 nucleotides
15432 and 15433 are separated by 158 nucleotides
15433 and 15434 are separated by 277 nucleotides
mRNA_7062: 15430 - HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001, at 792,528 to 793,710
15430
mRNA_7063: 15431 - Hypothetical Protein, at 793,722 to 794,198
15431
mRNA_7064: 15432 - K12778 HOP1 meiosis-specific protein HOP1, at 795,921 to 797,535
15432
mRNA_7065: 15433 - K03469 rnhA, RNASEH1 ribonuclease HI, at 797,694 to 798,933
15433
mRNA_7066: 15434 - K00799 GST, gst glutathione S-transferase, at 799,211 to 800,128
15434
Group
Condition
mRNA
_7062
mRNA
_7063
mRNA
_7064
mRNA
_7065
mRNA
_7066
15430
15431
15432
15433
15434
growth on ypd
YPD
-0.4
-0.5
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.5
+0.3
+0.2
-0.6
growth on oleic acid
YNB Oleic Acid
-1.0
-0.4
+0.0
+0.4
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.6
+1.0
-0.2
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.3
-0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.4
+0.4
-0.6
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.4
+0.4
+0.3
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.5
-0.0
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+1.2
+0.4
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.2
+1.3
-0.1
+0.0
+0.4
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.4
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.8
+0.3
-0.5
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
-0.0
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.7
-0.0
-0.2
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.3
+0.6
+0.2
-0.1
auxotrophy
Dropout Complete
+0.3
+0.2
+0.1
+0.2
+0.5
auxotrophy
YNB Glucose
+0.0
+0.1
+0.4
+0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+1.2
+0.2
+0.2
-0.6
growth on ricinoleic acid
YNB Glucose
+0.9
+0.4
+0.3
-0.2
+0.3
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