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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15433 and 15434 are separated by 277 nucleotides
15434 and 15435 are separated by 404 nucleotides
15435 and 15436 are separated by 477 nucleotides
15436 and 15437 are separated by 159 nucleotides
mRNA_7065: 15433 - K03469 rnhA, RNASEH1 ribonuclease HI, at 797,694 to 798,933
15433
mRNA_7066: 15434 - K00799 GST, gst glutathione S-transferase, at 799,211 to 800,128
15434
mRNA_7067: 15435 - K13507 GAT glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase, at 800,533 to 803,766
15435
mRNA_7068: 15436 - K00167 BCKDHB, bkdA2 2-oxoisovalerate dehydrogenase E1 component beta subunit, at 804,244 to 806,337
15436
mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806,497 to 812,015
15437
Group
Condition
mRNA
_7065
mRNA
_7066
mRNA
_7067
mRNA
_7068
mRNA
_7069
15433
15434
15435
15436
15437
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.8
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.5
N.D.
-0.5
+0.1
growth on ypd
YPD
-0.0
+0.1
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.3
N.D.
+0.7
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
N.D.
+0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
N.D.
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.6
N.D.
+0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.6
N.D.
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
N.D.
+0.4
+0.1
auxotrophy
Dropout Complete
+0.2
+0.5
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.5
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.8
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.7
N.D.
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.7
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.6
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose
+0.5
+0.3
N.D.
+0.3
+0.1
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