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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15435 and 15436 are separated by 477 nucleotides
15436 and 15437 are separated by 159 nucleotides
15437 and 15438 are separated by 657 nucleotides
15438 and 15439 are separated by 370 nucleotides
mRNA_7067: 15435 - K13507 GAT glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase, at 800,533 to 803,766
15435
mRNA_7068: 15436 - K00167 BCKDHB, bkdA2 2-oxoisovalerate dehydrogenase E1 component beta subunit, at 804,244 to 806,337
15436
mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806,497 to 812,015
15437
mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812,673 to 814,209
15438
mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814,580 to 815,327
15439
Group
Condition
mRNA
_7067
mRNA
_7068
mRNA
_7069
mRNA
_7070
mRNA
_7071
15435
15436
15437
15438
15439
growth on ypd
YPD
N.D.
-0.4
-0.1
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.0
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
+0.1
-0.0
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.3
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.0
+0.2
+0.4
auxotrophy
Dropout Complete
N.D.
-0.1
-0.0
+0.4
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.0
-0.1
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.2
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
+0.3
+0.2
auxotrophy
YNB Glucose
N.D.
+0.3
+0.1
+0.2
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.1
-0.0
+1.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.1
+0.2
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.0
+0.1
+1.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.0
+0.2
+0.8
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.1
+0.2
+1.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.2
+0.6
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.1
-0.0
+2.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
-0.1
+0.1
+2.2
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